Pyrogenicity could be caused by the presence of hard-to-kill organisms/spores, or by residuals, or by general sterilization failure. With regard to the first of those, pyronema domesticum is endemic on cotton from some parts of east Asia and from some other growing areas, and is more difficult to kill (with EO) than bacillus atropheous, the normal EO biological-indicator organism,so that normal EO sterilization qualification does not establish either sterility or inherent non-pyrogenicity if pyronema is present on the pre-sterilization cotton.
The point of pre-sterilization testing of cotton containing devices, I would think, would be to avoid the expense of EO processing if viable pyronema is present.