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I just went through an ISO 13485 certification audit with one minor non-conformity. it relates to defining product realization. If this is from design to delivery then am I required to provide risk management FMEA for not only manufacturing but transit, warehousing and shipping? I've never seen this as part of an FMEA and we are a medical device component supplier only.

I think your auditor has stretched things a bit especially as a component supplier. I have seen transportation and warehousing conditions taken into consideration for finished products however. Sealed packages made at sea level do have some problems going over the Rockies staying sealed. Same as items needing refrigeration going unrefrigerated trucks.