That makes things a little clearer. It doesn't sound like an audit, more like a Gap Analysis you are undertaking; followed by consultancy - it is a year long project. I would strongly recommend you don't refer to it any way (especially in documentation) as an audit.
You should consider the end-point of the project plan (which is the very first thing you should do before you even arrange your travel) as the successful implementation of the corrective actions from the actual audit.
You will obviously not be able to audit any of these organisations because you will have put the QMS, procedures etc in place.
If you want more detail, please post.