What the Registrar Says
Much as we don't like to hear it, the layout of the manual is often dictated by some requirements from the registration firms. For example, there is one well-respected firm that wants to see an index that provides cross-references of your manual section to the ISO 9001:2K standard and to procedures. They cannot give you a nonconformance, but the registrar will ask you to make this reference to "help" their auditors be more effective. It is in your interest to do so, because then the auditor spends less time at your facility looking for the references.
I suggest you speak to your registrar. Many times they also offer helpful website information that can assist you with the transition.
