One good place to start is by reading the ISO Abstract for the various documents.
ISO 9001 applies to many types of organizations and is a requirement for quality systems. Organizations can be audited to those requirements, and if they meet them, then Certified and Registered as meeting the requirements.
ISO/IEC 17025 applies to testing and calibration laboratories. This is for both commercial laboratories (the perform work for other companies) and captive laboratories (as part of an organization). Companies can be audited to those requirements, and if they meet them, then Accredited as meeting the requirements.
ISO 10012 is similar to ISO/IEC 17025, but I am not aware of any companies being Accredited to meeting the requirements. If you wish to implement a good measurement and calibration system, but do not require Accreditation, then consider this as an alternative. However, it has nearly been replaced by ISO/IEC 17025.
Gage R&R and MSA refer to requirements related to the automotive industry. The Automotive Industry Action Group (AIAG) http://www.aiag.org
issues the ISO/TS 16949:2002. It requires calibration and testing laboratories providing services to ISO/TS 16949 compliant companies to meet the ISO/IEC 17025 requirements. ISO/TS 16949 also requires the complaint companies to comply with measurement system analysis to show capability. As part of that requirement, Gage Repeatability and Reproducibility, along with other analysis, may be required to show this capability.