MSA, in my opinion, is designed for part inspection systems, where operator can significantly affect inspection result/evaluation.
Risk related to his/her instability has to be determined and considered while taking decision, whether measurement system would be or not reliable.
In case of automated systems, calibration does a MSA job supported by frequently verification (when possible) using some "masters".
You have to develop MSA policy.
It means, when manufacturing process for new product is designed, you know when MSA would be or not needed.
I suggest setting "combos" - simple combination gauge & inspected characteristic.
You can add & material part is made from, when you use various materials.
It doesn't matter if I measure wall thickness during incoming inspection or turning process.
It is a same measuring system and may be covered by one MSA.