The only software that i know that is specifical to the medical devices industry is Fmea for Medical Devices from Dyadem - http://www.dyadem.com/. The problem with this software is that it´s focused on FMEA (altough it can be "extended" in some ways).
Nowadays i would recomend a PLM (product lifecycle management) software with a risk management module tailored to ISo 14971. I don´t know if this solution is available commercially.
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